Task: Biology Development
Description: Debian-Med packages for development of micro-biology applications
 This meta package will install Debian packages which might be helpful
 for development of applications for micro-biological research.

Depends: bioperl, libncbi6-dev, mcl
Suggests: biomode, r-base-core

Recommends: libvibrant6-dev
Why: libmotif-dev conflicts lesstif-dev, so if someone wants to install libmotif-dev it must be possible to deinstall libvibrant6-dev without beeing forced to deinstall med-bio-dev as well

Depends: python-biopython

Depends: libbio-ruby

Recommends: libqsearch

Depends: bioclipse
Homepage: http://www.bioclipse.net/
Responsible: 
License: Eclipse Public License (EPL) + exception
WNPP: 
Pkg-Description: platform for chemo- and bioinformatics based on Eclipse
 The Bioclipse project is aimed at creating a Java-based, open source,
 visual platform for chemo- and bioinformatics based on the Eclipse
 Rich Client Platform (RCP). Bioclipse, as any RCP application, is based
 on a plugin architecture that inherits basic functionality and visual
 interfaces from Eclipse, such as help system, software updates,
 preferences, cross-platform deployment etc.
 .
 Bioclipse will provide functionality for chemo- and bioinformatics,
 and extension points that easily can be extended by plugins to provide
 added functionality. The first version of Bioclipse includes a
 CDK-plugin (bc_cdk) to provide a chemoinformatic backend, a Jmol-plugin
 (bc_jmol) for 3D-visualization and a general logging plugin. To stay
 updated on upcoming features, releases, new plugins etc, please register
 for the mailing list bioclipse-announce. The development is best
 followed on the Bioclipse Wiki where we document the progress and
 ideas of the development on a daily basis. 

Depends: aceperl
Homepage: http://stein.cshl.org/AcePerl/
Responsible: David Paleino <d.paleino@gmail.com>
License: GPL-1+ | Artistic
WNPP: 468760
Pkg-Description: interface for the AceDB genome database system
 AcePerl is an object-oriented Perl interface for the AceDB
 database. It provides functionality for connecting to remote AceDB
 databases, performing queries, fetching ACE objects, and updating
 databases. The programmer's API is compatible with the JADE Java API,
 and interoperable with the API used by BoulderIO.
 .
 AceDB is a genome database system developed since 1989 primarily by
 Jean Thierry-Mieg (CNRS, Montpellier) and Richard Durbin (Sanger
 Institute). It was originally developed for the C.elegans genome
 project , from which its name was derived (A C. elegans DataBase).

Depends: libgff-perl
Homepage: http://www.sanger.ac.uk/Software/formats/GFF/
Responsible: David Paleino <d.paleino@gmail.com>
License: GPL-1+
WNPP: 468826
Pkg-Description: Perl bindings for GFF Annotation Protocol
 GFF (Gene Finding Feature) is a format for describing genes and other
 features associated with DNA, RNA and Protein sequences.
 .
 This package provides a Perl module to use GFF objects.
