Task: Imaging
Description: Debian-Med imaging packages
 This meta package will install Debian packages which might be useful in medical
 image processing.

Depends: amide, ctsim, ctn, dicomnifti, imagej, minc-tools, medcon, python-nifti, xmedcon, dcmtk

Suggests: imagemagick, pngquant, imview

Depends: nifti-bin, dicomnifti, libvolpack1

Depends: aeskulap

Depends: fslview, fsl

Depends: bioimagesuite
Homepage: http://www.bioimagesuite.org/
Responsible: 
License: GPL
WNPP: 
Pkg-Description: integrated image analysis software suite
 BioImage Suite has extensive capabilities for both neuro/cardiac
 and abdominal image analysis and state of the art visualization.
 Many packages are available that are highly extensible, and provide
 functionality for image visualization and registration, surface
 editing, cardiac 4D multi-slice editing, diffusion tensor image
 processing, mouse segmentation and registration, and much more. It
 can be intergrated with other biomedical image processing software,
 such as FSL and SPM. This site provides information, downloads,
 documentation, and other resources for users of the software.
 .
 BioImage Suite was developed at Yale University and has been
 extensively used at different labs at Yale since 2004.
 .
 There is a forum at BioImage Suite site for discussion of
 compiling it from source and packaging issues at
 http://research.yale.edu/bioimagesuite/forum/index.php?board=12.0 

Depends: drjekyll
Homepage: http://drjekyll.sourceforge.net
Responsible: 
License: GPL
WNPP: 
Pkg-Description: interactive voxel editor for viewing and editing three-dimensional images
 It is specifically aimed at postprocessing of segmented datasets,
 but offers some functionality for raw data as well. 
 Voxel elements (=voxels) and pixel ("picture element") are viewed
 as data sets and can be processed by this program as kind of
 a final polishing process.
Why: Hint given by Petter Reinholdtsen 

Depends: libvista2
Homepage: http://mia.sourceforge.net/
Responsible: 
License: GPL
WNPP: 
Pkg-Description: software environment for computer vision research
 Vista is a software environment for computer vision research. It is
 designed to support not only images, but also edge sets, camera models,
 and more complex  data structures. Vista includes libraries of common
 computer vision and image  processing algorithms. It is written in
 ANSI C, for UNIX platforms running X Windows, and it is freely available.
 The original development was done  at University of British Columbia
 (http://www.cs.ubc.ca/nest/lci/vista/vista.html).
 .
 Because the development was stalled by the original authors the
 development continued in the "Tools for Medical Image Analysis"
 framework (http://mia.sourceforge.net/) which is maintained by
 Max Planck Institute of Cognitive Neuroscience
 (http://www.cns.mpg.de/).

Depends: dcm4che
Homepage: http://www.dcm4che.org/
Responsible: 
License: LGPL, MPL, Apache, other (also non-free)
WNPP: 
Pkg-Description: collection of open source applications and utilities healthcare enterprise
 At the core of the dcm4che project is a robust implementation of the
 DICOM standard. The dcm4che-1.x DICOM toolkit is used in many production
 applications across the world, while the current (2.x) version of the
 toolkit has been re-architected for high performance and flexibility.
 . 
 Also contained within the dcm4che project is dcm4chee (the extra 'e'
 stands for 'enterprise'). dcm4chee is an Image Manager/Image Archive
 (according to IHE). The application contains the DICOM, HL7 services
 and interfaces that are required to provide storage, retrieval, and
 workflow to a healthcare environment. dcm4chee is pre-packaged and
 deployed within the JBoss application server. By taking advantage of
 many JBoss features (JMS, EJB, Servlet Engine, etc.), and assuming the
 role of several IHE actors for the sake of interoperability, the
 application provides many robust and scalable services.

Depends: gwyddion

Depends: piano
Homepage: http://mbi.dkfz-heidelberg.de/mbi/software/
License: BSD
Pkg-Description: medical image processing library for surgical planning
 Piano is a library containing roughly 75 algorithms and tools for
 multi-dimensional medical image processing, analysis and visualization.
 It is used in the field of surgical planning.

Depends: nipy
Homepage: http://neuroimaging.scipy.org/
License: Free
Pkg-Description: development platform for neuroimaging research
 Python-based development platform for neuroimaging research. Please see                                                         
 https://cirl.berkeley.edu/view/Grants/BrainPySummary for a description of
 the various subprojects.

Depends: pixelmed
Homepage: http://www.pixelmed.com/index.html#PixelMedJavaDICOMToolkit
License: Free
Pkg-Description: PixelMed Java DICOM Toolkit
 This is a stand-alone DICOM toolkit that implements code for reading and
 creating DICOM data, DICOM network and file support, a database of DICOM objects,
 support for display of directories, images, reports and spectra, and DICOM object
 validation.

Depends: slicer
Homepage: http://www.slicer.org/
License: Non-free
Pkg-Description: visualization, registration, segmentation, and quantification of medical data
 The 3D Slicer is freely available, open-source software for visualization,
 registration, segmentation, and quantification of medical data. The slicer
 source seems to be available via CVS only.
 .
 The license statement can be seen at
 http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl

Depends: sofa
Homepage: http://www.sofa-framework.org/
License: LGPL
Pkg-Description: Simulation Open Framework Architecture
 SOFA (Simulation Open Framework Architecture) is an Open Source framework
 primarily targeted at real-time simulation, with an emphasis on medical
 simulation. It is mostly intended for the research community to help develop
 newer algorithms, but can also be used as an efficient prototyping tool.
 Based on an advanced software architecture, it allows to:
  * create complex and evolving simulations by combining new algorithms
    with algorithms already included in SOFA
  * modify most parameters of the simulation - deformable behavior, surface
    representation, solver, constraints, collision algorithm, etc. - by
    simply editing an XML file
  * build complex models from simpler ones using a scene-graph description
  * efficiently simulate the dynamics of interacting objects using abstract
    equation solvers
  * reuse and easily compare a variety of available methods
 SOFA version 1.0 beta 1 was released during the Medicine Meets Virtual
 Reality 2007 conference in Long Beach, California.

Depends: mesa-test-tools
Homepage: http://ihedoc.wustl.edu/mesasoftware/
License: free
Pkg-Description: IHE Test Software for Radiology
 The MESA software release which is available at
 http://ihedoc.wustl.edu/mesasoftware/10.15.0/dist/ provides several
 tools that might cover a wide range of applications for
 Integrating the Healthcare Enterprise (IHE) testing.
 .
 Another important element of the IHE testing process is the set of
 software tools HIMSS and RSNA have commissioned. Developed by the
 Electronic Radiology Laboratory at the Mallinckrodt Institute of
 Radiology, Washington University of St. Louis, the MESA tools are
 designed for use by participating companies in implementing IHE
 capabilities in their systems and preparing for the Connectathon. Their
 purpose is to provide communication partners, test data and test plans
 to allow organizations to provide a baseline level of testing as they
 implement the IHE Technical Framework. These tools are made available to
 participants during the period of an IHE demonstration year and are then
 released into the public domain at the end of that cycle. The latest
 version of the MESA Test Tools available in the public domain can be
 found here.
 .
 This kind of software is definitively valuable for information systems
 vendors and imaging systems vendors.
 .
 Because the CTN Debian package is based on an upstream dead project
 these tools should have a high priority for packaging because the
 CTN homepage http://erl.wustl.edu/research/dicom/ctn.html says:
 "The CTN software is also embedded within the MESA tools. The version
 of CTN software in those tools does not have a separate release number
 but is more current than version 3.0.6."

Depends: gdcm
Homepage: http://sourceforge.net/project/showfiles.php?group_id=137895
License: BSD
Pkg-URL: http://sourceforge.net/project/showfiles.php?group_id=137895&package_id=197047
Why: Real Address is http://sourceforge.net/project/showfiles.php?group_id=137895&package_id=197047, but update-tasks is buggy
Pkg-Description: Grass Root DICOM
 GDCM is yet another C++ library dedicated to reading/parsing and writing
 DICOM medical files. GDCM stands as a short for "Grass roots DiCoM".
 Supports currently RAW,JPEG,J2K,JPEG lossless,RLE, deflate(zlib) but
 not JPEG-LS,MPEG for now.

Depends: dicom4j
Homepage: http://dicom4j.sourceforge.net/
License: GPL
Pkg-Description: Java framework for Dicom
 Java framework for Dicom
